PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003433G0110
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GATA
Protein Properties Length: 389aa    MW: 39816.9 Da    PI: 9.5481
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003433G0110genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA344.1e-11244267124
             GATA   1 CsnCgttkTplWRrgpdgnktLCn 24 
                      C +C t kTp+WR gp g+ktLCn
  PH01003433G0110 244 CLHCETDKTPQWRTGPMGPKTLCN 267
                      99********************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.3E-6238284IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.57E-7239268No hitNo description
Gene3DG3DSA:3.30.50.106.1E-8239267IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.15E-6243268No hitNo description
PfamPF003201.1E-8244267IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MEVTAECAGG VRAKKEAGAG AGDLFLVDDL LDLPYDEEED EAAGLDGAYS AGAAGGGGEA  60
GNASADSSTV TAVDSCSNSF SGLGADGDFS GGLCGSRKLT RCIKNGNTLK YDQLAELEWL  120
SNYMGEDTFP TEDLRKLQLI SGIPAASAAG PAQPSGSVLP TEALVPGKAR SKRSRVAPCS  180
WSSRLLVLPP PPGSPPSPAS AVISPSESGT AAPPFPAKKP AKPAKKKDAP TPSVPNAAAE  240
RRRCLHCETD KTPQWRTGPM GPKTLCNDAV QRVRGAVQVG AAGAGVPAVG EPDLRRVEAL  300
QLPPQGGRAA APEGDAAPAP APAAAAAAAA RGRRRRRRRP SSRAEPAAVR WAVGAAHRRR  360
GRIPHPQPHR SRLPAAHLGT PLALELIR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1330337RGRRRRRR
2330338RGRRRRRRR
3332338RRRRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1007330.0FP100733.1 Phyllostachys edulis cDNA clone: bphylf029n16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638019.13e-81PREDICTED: GATA transcription factor 12
TrEMBLA2Y6M03e-81A2Y6M0_ORYSI; Putative uncharacterized protein
TrEMBLA0A0E0ITL23e-81A0A0E0ITL2_ORYNI; Uncharacterized protein
TrEMBLA0A0E0PQ273e-81A0A0E0PQ27_ORYRU; Uncharacterized protein
TrEMBLQ6F2Z73e-81Q6F2Z7_ORYSJ; Os05g0520300 protein
STRINGBGIOSGA020209-PA1e-80(Oryza sativa Indica Group)
STRINGLOC_Os05g44400.11e-80(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30253178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.13e-13GATA transcription factor 12